PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_10E85D5B3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 601aa    MW: 67435.5 Da    PI: 6.9606
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_10E85D5B3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.55e-1455133190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF +r  ks+++++ g   +++ +C + gk++   k+           r++C+a +++ +++d+ w+vt+ ++ HnH+
  Traes_5AL_10E85D5B3.1  55 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHA 131
                            6*********************8777.66789**********98877..........9*****************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_5AL_10E85D5B3.1 132 FS 133
                            86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-955133IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPRVRRGRIP DEREPDAQRV SALEKALTGF AERQTDVVVN PTVGTCFDSI TEAYDFYNLY  60
SWEMGFGIRY GKSRRNTKGG KCMQEITCVN AGKPNMGGKS RRCECTALIR LLRTDDNGWY  120
VTQHRKVHNH AFSTTYGNKV HWPSHKHLDK YTRDLVRQLR HNNVNLGVYD TIASFFGRME  180
NVPFNKRSIR TLCGEVIREQ AVDDARKTME TAAASGERPE NHTGEETTFN CMGLASTTVG  240
SPNMPVEPLR YPEQDDTHSN AEAGRLADLL LAFGDCHLVL KSCTYDDLIN SNGTMSGLEE  300
AVKAVTPHLQ QGIFGDLWSR AHNSGGVVSA QVLTIKDLFR FTRWLTTTTG QHNLRCVQQR  360
AKLVNSGKAV LEPEQIALLH LYQAENDEYS VKMNKLQGER DAKIAQYMAK IDEARKSFEV  420
SIQAAKQHYP VSASYVALDS NELRAQCWTM YLAQCRKEAK DLNAKASNIV EKYGPEVIQR  480
HLFEFCSQET NRQALLKYAQ TKVNNLKEAG DARGEDTLHD YMTLLDIEKA YALLAAEEQI  540
ANCPDTCGGS EDADRGNINN IIARGEAADG ARGDGQDGGE GASEGPPRQK RQRNDQDYVW  600
W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588740.0AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578953.10.0PREDICTED: uncharacterized protein LOC100833635
TrEMBLW5EUP90.0W5EUP9_WHEAT; Uncharacterized protein
STRINGMLOC_39233.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-10FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]